Skills

github.com/google-deepmind/science-skills3.4k

science-skills

GDM Science Skills to speed up agentic scientific workflows with better grounding and...

npx skills add google-deepmind/science-skills -g -y
39 skills

Alphafold Database Fetch And Analyze

Retrieve and analyze AlphaFold predicted structures for a protein.

google-deepmind/science-skills3.4k

Alphagenome Atlas Website Links

Constructs deep-links and URLs for the AlphaGenome Atlas website.

google-deepmind/science-skills3.4k

Alphagenome Single Variant Analysis

Analyzes genetic variant effects on gene expression (RNA-seq), chromatin accessibility...

google-deepmind/science-skills3.4k

Alphagenome Variant Impact Score

Score, annotate, and analyze the functional impact of genetic variants using...

google-deepmind/science-skills3.4k

Chembl Database

Query the ChEMBL database for bioactive molecules, drug targets, bioactivity data...

google-deepmind/science-skills3.4k

Clinical Trials Database

Query ClinicalTrials.gov via APIv2.

google-deepmind/science-skills3.4k

Clinvar Database

Use when needing clinical significance, pathogenicity classifications (e.g....

google-deepmind/science-skills3.4k

Credentials

Instructions for handling API keys and credentials safely, verifying their presence...

google-deepmind/science-skills3.4k

Dbsnp Database

Use when you want to look up, map, and search for short genetic variants (SNPs, indels)...

google-deepmind/science-skills3.4k

Embl Ebi Ols

Query and search the EMBL-EBI Ontology Lookup Service (OLS) for biomedical ontology...

google-deepmind/science-skills3.4k

Encode Ccres Database

Query the ENCODE Registry of cis-Regulatory Elements (cCREs) via the SCREEN GraphQL...

google-deepmind/science-skills3.4k

Ensembl Database

Query the Ensembl database to resolve gene, transcript, and protein IDs, fetch genomic...

google-deepmind/science-skills3.4k

Foldseek Structural Search

Performs 3D structural searches of proteins against various databases (PDB, AlphaFold...

google-deepmind/science-skills3.4k

Gnomad Database

Query the Genome Aggregation Database (gnomAD).

google-deepmind/science-skills3.4k

Gtex Database

Use when you want to retrieve quantitative RNA expression data and variant eQTL...

google-deepmind/science-skills3.4k

Human Protein Atlas Database

Use when you want to retrieve semi-quantitative protein expression and spatial...

google-deepmind/science-skills3.4k

Interpro Database

Identify domains, families, and sites in proteins; find all proteins in a family or...

google-deepmind/science-skills3.4k

Jaspar Database

Query the JASPAR database for Transcription Factor (TF) binding profiles.

google-deepmind/science-skills3.4k

Literature Search Arxiv

Search for scientific papers, preprints, and publications on arXiv.

google-deepmind/science-skills3.4k

Literature Search Biorxiv

Browse and filter life sciences, biology, and medical preprints from bioRxiv and medRxiv.

google-deepmind/science-skills3.4k

Literature Search Europepmc

Search Europe PMC for scientific literature and download open-access full texts and PDFs.

google-deepmind/science-skills3.4k

Literature Search Openalex

Query the OpenAlex scholarly database for research papers, authors, institutions...

google-deepmind/science-skills3.4k

Ncbi Sequence Fetch

Retrieve protein and nucleotide sequences from NCBI databases using E-utilities.

google-deepmind/science-skills3.4k

Openfda Database

Query, search, and download data from the openFDA API for drugs, devices, foods...

google-deepmind/science-skills3.4k

Opentargets Database

Query Open Targets Platform for target-disease associations, drug target discovery...

google-deepmind/science-skills3.4k

Pdb Database

Use when you want to search for or download experimentally-determined 3D structures for...

google-deepmind/science-skills3.4k

Predictingthepast

Ancient text restoration, attribution, dating, contextualization, and embedding via...

google-deepmind/science-skills3.4k

Protein Sequence Msa

Performs multiple sequence alignment of proteins with EBI Clustal Omega.

google-deepmind/science-skills3.4k

Protein Sequence Similarity Search

Searches for homologous protein sequences using MMseqs2 (fast, default) or BLAST...

google-deepmind/science-skills3.4k

Pubchem Database

Query PubChem, search by name/CID/SMILES, retrieve properties, similarity/substructure...

google-deepmind/science-skills3.4k

Pubmed Database

Search PubMed for scientific literature, including published clinical trials.

google-deepmind/science-skills3.4k

Pymol

Visualize, analyze, and render protein and molecular structures using PyMOL.

google-deepmind/science-skills3.4k

Quickgo Database

Query the QuickGO and Evidence & Conclusion Ontology (ECO) REST API.

google-deepmind/science-skills3.4k

Reactome Database

Query the Reactome database (Analysis and Content Services).

google-deepmind/science-skills3.4k

String Database

Query the STRING database for protein-protein interactions (PPIs), functional...

google-deepmind/science-skills3.4k

Ucsc Conservation And Tfbs

Fetch Evolutionary Conservation scores (phyloP, phastCons) and Transcription Factor...

google-deepmind/science-skills3.4k

Unibind Database

Queries the UniBind database for experimentally validated transcription factor (TF)...

google-deepmind/science-skills3.4k

Uniprot Database

Access protein metadata, function, taxonomy, and sequences across UniProtKB, UniParc...

google-deepmind/science-skills3.4k

Workflow Skill Creator

Distills a completed user workflow or interaction into a reusable agent skill.

google-deepmind/science-skills3.4k