Obsidian Setup, Vault Initialization

You are setting up a new Obsidian wiki vault (or repairing an existing one).

Step 1: Create .env

If .env doesn't exist, create it from .env.example. Ask the user for:

1. Where should the vault live? → OBSIDIAN_VAULT_PATH

   • Default: ~/Documents/obsidian-wiki-vault
   • Must be an absolute path (after expansion)

2. Where are your source documents? → OBSIDIAN_SOURCES_DIR

   • Can be multiple paths, comma-separated
   • Default: ~/Documents
   • Local git repo clones (public or private, any host) can be listed here too, clone the repo locally first, then add its path. See "Ingesting Git Repositories" in wiki-ingest/SKILL.md for how repo sources are handled.

3. Want to import Claude history? → CLAUDE_HISTORY_PATH

   • Default: auto-discovers from ~/.claude
   • Set explicitly if Claude data is elsewhere

4. Have QMD installed? → QMD_WIKI_COLLECTION / QMD_PAPERS_COLLECTION / QMD_TRANSPORT

   • Optional. Enables semantic search in wiki-query and source discovery in wiki-ingest.
   • Default to QMD_TRANSPORT=mcp unless the user wants the agent to call the local qmd CLI directly.