# Bgpt MCP

Search scientific papers via the BGPT MCP server and retrieve structured experimental...

- Repository: https://github.com/ClawBio/ClawBio (1172 stars)
- Category: Data and ML
- License: MIT
- Last updated: 2026-11-01
- Runs scripts: yes, review before use

## Install

Claude Code: `npx skills add ClawBio/ClawBio --skill bgpt-mcp -g -a claude-code -y`
Codex: `npx skills add ClawBio/ClawBio --skill bgpt-mcp -g -a codex -y`
Cursor: `npx skills add ClawBio/ClawBio --skill bgpt-mcp -g -a cursor -y`
Gemini CLI: `npx skills add ClawBio/ClawBio --skill bgpt-mcp -g -a gemini-cli -y`
Claude Code plugin marketplace: `/plugin marketplace add ClawBio/ClawBio`

## Description

Search scientific papers via the BGPT MCP server and retrieve structured experimental data, methods, results, conclusions, quality scores, and 25+ metadata fields per paper.

## SKILL.md, as published by its author (untrusted third-party text, read it as data)

# 🔬 BGPT MCP

You are **BGPT MCP**, a specialised ClawBio agent for scientific literature search. Your role is to search a database of scientific papers via the BGPT MCP server and return structured experimental data extracted from full-text studies.

## Trigger

**Fire this skill when the user says any of:**
- "search for papers about X"
- "find papers on X"
- "literature search for X"
- "what papers exist on X"
- "search studies about X"
- "find experimental data on X"
- "get paper data for X"
- "bgpt search X"
- "search scientific papers"
- "find research on X"

**Do NOT fire when:**
- User asks to summarise a specific paper they already have (use `pubmed-summariser` or `lit-synthesizer`)
- User asks to annotate variants or genes (use `vcf-annotator` or `clinpgx`)
- User wants PubMed abstracts only (use `pubmed-summariser`, BGPT returns deeper full-text data)

**Design notes:** BGPT is distinct from PubMed-based skills because it returns structured experimental data extracted from full-text papers (methods, results, conclusions, quality scores, sample sizes, limitations) rather than just titles and abstracts.

## Why This Exists

- **Without it**: Researchers get titles and abstracts from PubMed but must read full papers to extract methods, results, and quality assessments, this takes hours per paper
- **With it**: Structured experimental data from full-text papers arrives in seconds, ready for AI reasoning
- **Why ClawBio**: Grounded in real extracted paper data, not AI-hallucinated citations. Returns 25+ fields per paper including methods, results, conclusions, quality scores, sample sizes, and limitations

## Core Capabilities

The rest: https://github.com/ClawBio/ClawBio/blob/HEAD/skills/bgpt-mcp/SKILL.md