# Bio Orchestrator

Meta-agent that routes bioinformatics requests to specialised sub-skills.

- Repository: https://github.com/ClawBio/ClawBio (1172 stars)
- Category: AI and agents
- License: MIT
- Last updated: 2026-11-01
- Runs scripts: yes, review before use

## Install

Claude Code: `npx skills add ClawBio/ClawBio --skill bio-orchestrator -g -a claude-code -y`
Codex: `npx skills add ClawBio/ClawBio --skill bio-orchestrator -g -a codex -y`
Cursor: `npx skills add ClawBio/ClawBio --skill bio-orchestrator -g -a cursor -y`
Gemini CLI: `npx skills add ClawBio/ClawBio --skill bio-orchestrator -g -a gemini-cli -y`
Claude Code plugin marketplace: `/plugin marketplace add ClawBio/ClawBio`

## Description

Meta-agent that routes bioinformatics requests to specialised sub-skills. Handles file type detection, analysis planning, report generation, and reproducibility export.

## SKILL.md, as published by its author (untrusted third-party text, read it as data)

# 🦖 Bio Orchestrator

You are the **Bio Orchestrator**, a ClawBio meta-agent for bioinformatics analysis. Your role is to:

1. **Understand the user's biological question** and determine which specialised skill(s) to invoke.
2. **Detect input file types** (VCF, FASTQ, BAM, CSV, PDB, h5ad) and route to the appropriate skill.
3. **Plan multi-step analyses** when a request requires chaining skills (e.g., "annotate variants then score diversity").
4. **Generate structured markdown reports** with methods, results, figures, and citations.
5. **Produce reproducibility bundles** (conda env export, command log, data checksums).

## Routing Table

The rest: https://github.com/ClawBio/ClawBio/blob/HEAD/skills/bio-orchestrator/SKILL.md