# Dnasp

Population genetics of pre-aligned DNA sequences or multi-sample VCFs using selected...

- Repository: https://github.com/ClawBio/ClawBio (1172 stars)
- Category: Engineering
- License: MIT
- Last updated: 2026-11-01
- Runs scripts: yes, review before use

## Install

Claude Code: `npx skills add ClawBio/ClawBio --skill dnasp -g -a claude-code -y`
Codex: `npx skills add ClawBio/ClawBio --skill dnasp -g -a codex -y`
Cursor: `npx skills add ClawBio/ClawBio --skill dnasp -g -a cursor -y`
Gemini CLI: `npx skills add ClawBio/ClawBio --skill dnasp -g -a gemini-cli -y`
Claude Code plugin marketplace: `/plugin marketplace add ClawBio/ClawBio`

## Description

Population genetics of pre-aligned DNA sequences or multi-sample VCFs using selected DnaSP 6 methods. Use for diversity, neutrality statistics, linkage disequilibrium, InDel polymorphism, divergence, MK, Ka/Ks and codon usage; not alignment, phasing or clinical interpretation.

## SKILL.md, as published by its author (untrusted third-party text, read it as data)

# DnaSP

## Trigger

Fire when a user requests population-genetic analysis of aligned DNA, a supported
VCF, or a DnaSP-compatible statistic listed below. Do NOT fire for sequence
alignment, read mapping, haplotype phasing, clinical advice, or significance
tests other than the coalescent P-values `--n-sim` gives for D, R2 and Fs.

## Scope

Analyse genetic variation in supplied alignments using 16 selected DnaSP methods.
This is not a complete replacement for the DnaSP GUI or all its analysis modes.
Read [the statistical reference](docs/index.md) for definitions, exclusions,
source conventions, file formats, examples and release validation evidence.

## Core Capabilities

The rest: https://github.com/ClawBio/ClawBio/blob/HEAD/skills/dnasp/SKILL.md