Adaptyv Protein Experiments
Designs protein assay experiments and submits sequences to the Adaptyv Bio Foundry API.
Install
npx skills add K-Dense-AI/scientific-agent-skills --skill adaptyv -g -a claude-code -y- Repository
- K-Dense-AI/scientific-agent-skills55.7k
- Category
- Data and ML
- Updated
- 9d ago
- License
- MIT
- Context cost
- Mediumabout 3,000 tokens
- Runs scripts
- No, instructions only
What it does
Uses the Adaptyv Bio Foundry API and Python SDK to design protein characterization experiments, estimate costs, submit sequences, monitor laboratory progress, and retrieve results. Applies to Adaptyv Foundry, its target catalog, binding screening and affinity assays, thermostability, expression, fluorescence, epitope binning, and enzyme activity workflows, including code using adaptyv or FoundryClient.
Adaptyv Bio Foundry API
Use this skill to turn protein sequences into experimentally measured data through Adaptyv's cloud laboratory. Confirm the target construct, assay conditions, controls, and replicate plan before submitting a batch; turnaround depends on the experiment.
Reviewed against the deployed OpenAPI schema
(info.version: 0.0.2) and official SDK 0.1.0 at commit
cdf207819ed5a58e0c127453626d2bce125c8064. The schema version alone does not identify
all changes. See the endpoint reference for current
request/response details and discrepancies in upstream examples.
Connect
Base URL: https://devs.adaptyvbio.com/api/v1. The schema is at
/openapi.json; never append that filename to normal endpoint requests.
Create a bearer token in Foundry under
Organization → Settings → Tokens. Use Viewer for reads and Member for experiment
writes. Read credentials from ADAPTYV_API_KEY; the documentation's
FOUNDRY_API_TOKEN is an alternative variable name for the same token. If using a
project .env, explicitly call python-dotenv.load_dotenv() before SDK setup;
the SDK does not load that file automatically. Never print or commit tokens.
# ADAPTYV_API_KEY is already set in the environment.
curl --fail-with-body 'https://devs.adaptyvbio.com/api/v1/targets?limit=3' \
-H "Authorization: Bearer $ADAPTYV_API_KEY"
Resource endpoints require bearer authentication. The schema and liveness endpoint
GET /info/health are public. GET /whoami reports the active organization and
permissions; check it when account scope is unclear.
Python SDK
Install the reviewed revision in your project environment (requires Python 3.11+):
uv pip install "git+https://github.com/adaptyvbio/adaptyv-sdk.git@cdf207819ed5a58e0c127453626d2bce125c8064"
