Skills

github.com/bioMate-AI/biomate-bioconductor-kb793

biomate-bioconductor-kb

BioMate-KB Bioconductor Skills, 200 packages (top 100 by downloads + 100 rising stars)...

npx skills add bioMate-AI/biomate-bioconductor-kb -g -y
bioMate-AI/biomate-bioconductor-kb preview
40 skills

Bioconductor Aucell

AUCell allows to identify cells with active gene sets (e.g.

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Awst

We propose an Asymmetric Within-Sample Transformation (AWST) to regularize RNA-seq read...

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Bindingsitefinder

Precise knowledge on the binding sites of an RNA-binding protein (RBP) is key to...

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Biomart

In recent years a wealth of biological data has become available in public data...

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Bionar

The R package BioNAR, developed to step by step analysis of PPI network.

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Bumphunter

Tools for finding bumps in genomic data

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Cellbarcode

The package CellBarcode performs Cellular DNA Barcode analysis.

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Chipseeker

ChIPseeker is a Bioconductor package for annotating ChIP-seq data analysis.

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Cogeqc

Cogeqc aims to facilitate systematic quality checks on standard comparative genomics...

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Condiments

This package encapsulate many functions to conduct a differential topology analysis.

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Cotan

Statistical and computational method to analyze the co-expression of gene pairs at...

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Crisprbase

Provides S4 classes for general nucleases, CRISPR nucleases, CRISPR nickases, and base...

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Crisprviz

Provides functionalities to visualize and contextualize CRISPR guide RNAs (gRNAs) on...

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Decipher

A toolset for deciphering and managing biological sequences.

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Demuxmix

A package for demultiplexing single-cell sequencing experiments of pooled cells labeled...

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Dnacopy

Implements the circular binary segmentation (CBS) algorithm to segment DNA copy number...

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Dose

This package implements five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang...

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Doubletrouble

Doubletrouble aims to identify duplicated genes from whole-genome protein sequences and...

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Drugtargetinteractions

Provides utilities for identifying drug-target interactions for sets of small molecule...

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Enrichplot

The 'enrichplot' package implements several visualization methods for interpreting...

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Epigrahmm

EpigraHMM provides a set of tools for the analysis of epigenomic data based on hidden...

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Genomicranges

The ability to efficiently represent and manipulate genomic annotations and alignments...

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Ggmanh

Manhattan plot and QQ Plot are commonly used to visualize the end result of Genome Wide...

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Ggtree

Ggtree' extends the 'ggplot2' plotting system which implemented the grammar of graphics.

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Gypsum

Client for the gypsum REST API (https://gypsum.artifactdb.com), a cloud-based file...

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Hicontacts

HiContacts provides a collection of tools to analyse and visualize Hi-C datasets...

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Macsr

The Model-based Analysis of ChIP-Seq (MACS) is a widely used toolkit for identifying...

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Microbiome

Utilities for microbiome analysis.

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Msbackendmassbank

Mass spectrometry (MS) data backend supporting import and export of MS/MS library...

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Mscoreutils

MsCoreUtils defines low-level functions for mass spectrometry data and is independent...

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Msdatahub

The MsDataHub package uses the ExperimentHub infrastructure to distribute raw mass...

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Msnbase

MSnbase provides infrastructure for manipulation, processing and visualisation of mass...

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Mzid

A parser for mzIdentML files implemented using the XML package.

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Organismdbi

The package enables a simple unified interface to several annotation packages each of...

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Phyloseq

Phyloseq provides a set of classes and tools to facilitate the import, storage...

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Qvalue

This package takes a list of p-values resulting from the simultaneous testing of many...

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Rblast

Seamlessly interfaces the Basic Local Alignment Search Tool (BLAST) to search genetic...

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Stringdb

Tags: [bioconductor, r, proteomics, vignette-grounded]

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Tfbstools

TFBSTools is a package for the analysis and manipulation of transcription factor...

bioMate-AI/biomate-bioconductor-kb793

Bioconductor Treesummarizedexperiment

TreeSummarizedExperiment has extended SingleCellExperiment to include hierarchical...

bioMate-AI/biomate-bioconductor-kb793