Cerna Analysis
Use when building a ceRNA regulatory network from a key gene list by combining bundled...
Install
npx skills add aipoch/medical-research-skills --skill cerna-analysis -g -a claude-code -y- Repository
- aipoch/medical-research-skills2k
- Category
- Documents
- Updated
- 2mo ago
- License
- MIT
- Context cost
- Mediumabout 2,300 tokens
- Runs scripts
- No, instructions only
What it does
Use when building a ceRNA regulatory network from a key gene list by combining bundled miRNA-mRNA and miRNA-lncRNA database files, with flat-file CSV exports and PDF visualization in a single output directory. NOT for: differential expression, single-cell analysis, enrichment analysis, or workflows without a key gene list.
ceRNA Analysis
When to Use
Use this skill when you need to construct a ceRNA regulatory network from a known key-gene list using the bundled miRNA-mRNA and miRNA-lncRNA reference tables.
Use it for:
- Building a ceRNA network from one gene list and exporting flat CSV plus PDF outputs
- Comparing supported miRNA source modes such as
combined,starbase, or pairwise overlaps - Re-running the same local workflow with different lncRNA strictness, layout, or plotting parameters
Do not use it for:
- Differential expression, single-cell, enrichment, or survival analysis
- Workflows that do not start from a key gene list
- Cases where you want a miRNA-mRNA-only graph without a retained lncRNA ceRNA layer
Input Validation
This skill accepts:
- A key gene list as a plain-text file (one gene symbol per line) or as a comma-separated string on the CLI
- Optional parameter overrides for dataset mode, lncRNA strictness, layout, colors, and timeout
If the user's request does not involve building a ceRNA regulatory network from a key gene list, for example, asking to run differential expression, enrichment analysis, single-cell workflows, or survival analysis, do not proceed with the workflow. Instead respond:
"ceRNA Analysis is designed to construct a ceRNA regulatory network from a key gene list using bundled miRNA-mRNA and miRNA-lncRNA reference databases. Your request appears to be outside this scope. Please provide a key gene list and specify a supported miRNA dataset mode, or use a more appropriate skill for differential expression, enrichment analysis, or single-cell workflows."
