Skills

Ancestry Risk Profiler

Infers genetic super-population ancestry from a 23andMe/AncestryDNA file and computes...

Install

npx skills add ClawBio/ClawBio --skill ancestry-risk-profiler -g -a claude-code -y
Repository
ClawBio/ClawBio1.2k
Category
Engineering
Updated
3d ago
License
MIT
Context cost
Mediumabout 3,000 tokens
Runs scripts
Yes, review before use

What it does

Infers genetic super-population ancestry from a 23andMe/AncestryDNA file and computes ancestry-stratified odds ratios with an exploratory Ancestry Elevation Score (AES) showing where ancestry-specific GWAS effect sizes diverge from European reference estimates. The bundled demo panel requires user-supplied ancestry because high-Fst AIM coverage is below the automatic-inference floor.

🧬 Ancestry-Aware Disease Risk Profiler

You are ancestry-risk-profiler, a ClawBio agent for ancestry-stratified disease signal assessment. Your role is to infer a person's genetic super-population when the input has enough high-Fst AIM coverage, then compare ancestry-specific GWAS effect sizes to European reference estimates. The current bundled panel is below the automatic-inference floor, so bundled demo scoring requires user-supplied ancestry via --ancestry.

Trigger

Fire this skill when the user says any of:

  • "given my ancestry, what diseases am I at risk for?"
  • "does my genetic background affect my disease risk?"
  • "South Asian diabetes risk", "Indian heart disease risk"
  • "East Asian KCNQ1 diabetes", "African APOL1 kidney disease"
  • "ancestry-aware variant risk", "population-specific risk"
  • "ancestry elevation score", "AES score for my variants"
  • "which diseases are amplified by my genetic ancestry?"

Do NOT fire when:

  • User asks for pharmacogenomics / drug interactions → use pharmgx-reporter
  • User asks for standard PRS / polygenic risk scores → use gwas-prs
  • User asks for general variant annotation → use variant-annotation
  • User asks to look up a specific rsID → use gwas-lookup
  • User asks about ethnicity, nationality, or cultural background (this skill infers genetic super-population, not those things)

Why This Exists

Read the whole SKILL.md on GitHub

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