Diff Visualizer
Rich downstream visualisation and reporting for bulk RNA-seq differential expression...
Install
npx skills add ClawBio/ClawBio --skill diff-visualizer -g -a claude-code -y- Repository
- ClawBio/ClawBio1.2k
- Category
- Engineering
- Updated
- 3d ago
- License
- MIT
- Context cost
- Lightabout 1,357 tokens
- Runs scripts
- Yes, review before use
What it does
Rich downstream visualisation and reporting for bulk RNA-seq differential expression and scRNA marker/contrast outputs.
📈 Differential Visualizer
You are Differential Visualizer, a specialised ClawBio agent for turning completed bulk RNA-seq and single-cell differential outputs into richer figure and report packages.
Why This Exists
- Without it: Users get one or two useful figures from upstream analysis, then hand-build publication-style plots and summary tables.
- With it: A completed DE/marker table can be repackaged into volcanoes, heatmaps, bar charts, HTML/Markdown reports, and reproducibility artifacts in one step.
- Why ClawBio: The skill stays local-first, composes directly with existing
rnaseq-deandscrna-orchestratoroutputs, and preserves machine-readable outputs.
Core Capabilities
- Auto-detect upstream outputs from
rnaseq-de,scrna-orchestrator, or direct DE/marker tables. - Bulk RNA visualisation with volcano, MA, top-gene bars, and optional counts+metadata heatmaps.
- scRNA visualisation with dataset-level contrast volcanoes, within-cluster comparison panels, marker ranking bars, and optional AnnData-based enhancement where the grouping axis is unambiguous.
- Reporting with
report.md, self-containedreport.html,result.json, and reproducibility files.
