Dnasp
Population genetics of pre-aligned DNA sequences or multi-sample VCFs using selected...
Install
npx skills add ClawBio/ClawBio --skill dnasp -g -a claude-code -y- Repository
- ClawBio/ClawBio1.2k
- Category
- Engineering
- Updated
- 3d ago
- License
- MIT
- Context cost
- Mediumabout 3,000 tokens
- Runs scripts
- Yes, review before use
What it does
Population genetics of pre-aligned DNA sequences or multi-sample VCFs using selected DnaSP 6 methods. Use for diversity, neutrality statistics, linkage disequilibrium, InDel polymorphism, divergence, MK, Ka/Ks and codon usage; not alignment, phasing or clinical interpretation.
DnaSP
Trigger
Fire when a user requests population-genetic analysis of aligned DNA, a supported
VCF, or a DnaSP-compatible statistic listed below. Do NOT fire for sequence
alignment, read mapping, haplotype phasing, clinical advice, or significance
tests other than the coalescent P-values --n-sim gives for D, R2 and Fs.
Scope
Analyse genetic variation in supplied alignments using 16 selected DnaSP methods. This is not a complete replacement for the DnaSP GUI or all its analysis modes. Read the statistical reference for definitions, exclusions, source conventions, file formats, examples and release validation evidence.
