Skills

Benchmark Pii Recall

Benchmark an OpenMed PII model with synthetic gold spans and report label-aware...

Install

npx skills add maziyarpanahi/openmed --skill benchmark-pii-recall -g -a claude-code -y
Repository
maziyarpanahi/openmed5.8k
Category
AI and agents
Updated
4d ago
License
Apache-2.0
Context cost
Lightabout 948 tokens
Runs scripts
No, instructions only

What it does

Benchmark an OpenMed PII model with synthetic gold spans and report label-aware exact-span and grapheme recall without emitting identifier surfaces. Use when an agent must compare a model, threshold, backend, or quantized artifact and enforce a recall floor before release.

Benchmark PII recall

Measure PII recall before optimizing F1, size, or latency. A missed direct identifier is a privacy failure even when aggregate F1 improves.

Procedure

  1. Build synthetic fixtures with exact offsets and canonical PII labels.
  2. Include direct identifiers, boundary cases, languages/scripts, and the target device or quantization.
  3. Run extract_pii at the candidate threshold.
  4. Normalize prediction labels and score each document separately.
  5. Aggregate counts only; do not persist raw text or identifier surfaces.
  6. Fail the release when the recall floor or zero-critical-leak requirement is not met.

Runnable synthetic benchmark

Install the model runtime first with python -m pip install "openmed[hf]".

from openmed import extract_pii
from openmed.core.labels import normalize_label
from openmed.eval import compute_character_recall, compute_exact_span_f1

MODEL = "OpenMed/OpenMed-PII-SuperClinical-Small-44M-v1"
RECALL_FLOOR = 0.99
FIXTURES = [
    {
        "text": (
            "Call the synthetic clinic at 212-555-0198 or email "
            "demo.patient@example.test."
        ),
        "spans": [
            ("PHONE", "212-555-0198"),
            ("EMAIL", "demo.patient@example.test"),
        ],
    },
    {
        "text": (
            "The synthetic callback number is 415-555-0136 and the contact "
            "address is sample.user@example.test."
        ),
        "spans": [
            ("PHONE", "415-555-0136"),
            ("EMAIL", "sample.user@example.test"),
        ],
    },
]

true_positives = false_positives = false_negatives = 0
covered_graphemes = total_graphemes = 0

for fixture in FIXTURES:
    text = fixture["text"]
    gold = []
    for label, surface in fixture["spans"]:
        start = text.index(surface)
        gold.append(
            {"start": start, "end": start + len(surface), "label": label}
        )
Read the whole SKILL.md on GitHub

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