openmed

Local-first healthcare AI: clinical NER and HIPAA PII de-identification on hardware you...

/plugin marketplace add maziyarpanahi/openmed

48 skills

Variant Annotation

Annotates VCF variants and normalizes HGVS with public annotators and gnomAD frequencies.

maziyarpanahi/openmed5.8k

Ask Openmed

Choose the first OpenMed workflow skill for an intake, privacy, extraction, exchange...

maziyarpanahi/openmed5.8k

Assembling Fhir Bundles

Package multiple FHIR R4 resources produced from OpenMed output into a single valid...

maziyarpanahi/openmed5.8k

Auditing Deid Leakage

Adversarially scan already-de-identified clinical text for residual identifiers and...

maziyarpanahi/openmed5.8k

Auditing Deidentification Runs

Produce a signed, reproducible, no-PHI audit trail for an OpenMed de-identification run...

maziyarpanahi/openmed5.8k

Auditing Part11 Trails

Generates and verifies 21 CFR Part 11-style audit trails, who/what/when, electronic...

maziyarpanahi/openmed5.8k

Auditing Safe Harbor Checklist

Verify OpenMed de-identified output against all 18 HIPAA Safe Harbor identifier...

maziyarpanahi/openmed5.8k

Auditing Subgroup Fairness

Audit an OpenMed NER or de-identification model for performance disparities across...

maziyarpanahi/openmed5.8k

Authoring Model Cards

Generate a model card for an OpenMed clinical NER or de-identification model...

maziyarpanahi/openmed5.8k

Batch Processing Clinical Text

Run large-scale batch NER, PII extraction, or de-identification over many clinical...

maziyarpanahi/openmed5.8k

Benchmark Pii Recall

Benchmark an OpenMed PII model with synthetic gold spans and report label-aware...

maziyarpanahi/openmed5.8k

Benchmarking Clinical Ner

Score an OpenMed clinical or biomedical NER model against a user-supplied gold corpus...

maziyarpanahi/openmed5.8k

Bridging Presidio And Spacy

Combine OpenMed clinical NLP with Microsoft Presidio, spaCy, or LangChain through...

maziyarpanahi/openmed5.8k

Building Gold Corpus

Scaffold a synthetic gold-standard annotation project for evaluating OpenMed NER and...

maziyarpanahi/openmed5.8k

Building Patient Timelines

Assemble a chronological patient timeline from OpenMed-extracted clinical events...

maziyarpanahi/openmed5.8k

Building With Openmed

Orient and bootstrap any project that uses OpenMed, the on-device clinical and...

maziyarpanahi/openmed5.8k

Checking Hipaa Compliance

Runs a HIPAA Privacy and Security Rule checklist over a data pipeline and produces a...

maziyarpanahi/openmed5.8k

Choosing Openmed Models

Discover and pick the right OpenMed model for a clinical or biomedical task, domain, or...

maziyarpanahi/openmed5.8k

Coding Hcc Risk Adjustment

Maps chronic conditions extracted by OpenMed to CMS-HCC V28 risk-adjustment categories...

maziyarpanahi/openmed5.8k

Coding Icd10

Suggests candidate ICD-10-CM diagnosis codes (and ICD-10-PCS procedure codes) for...

maziyarpanahi/openmed5.8k

Computing Ecqms

Compute electronic clinical quality measures (eCQMs) over structured data using CQL/QDM...

maziyarpanahi/openmed5.8k

Configuring Privacy Policies

Select and customize OpenMed's seven bundled privacy policy profiles for...

maziyarpanahi/openmed5.8k

Defining Cohort Phenotypes

Authors computable phenotype and cohort definitions in the OHDSI ATLAS / CIRCE style...

maziyarpanahi/openmed5.8k

Deidentify A Dataset

De-identify selected free-text columns in a local CSV, JSONL, or Parquet dataset with...

maziyarpanahi/openmed5.8k

Deidentifying Clinical Text

Remove, mask, or replace PHI/PII in clinical free text on-device with OpenMed's...

maziyarpanahi/openmed5.8k

Deidentifying Multilingual Text

De-identify non-English clinical text on-device with OpenMed by passing lang= and...

maziyarpanahi/openmed5.8k

Deploying Openmed MCP

Run OpenMed's Model Context Protocol (MCP) server so coding agents (Claude Code, Codex)...

maziyarpanahi/openmed5.8k

Detecting Pv Signals

Computes disproportionality signals, PRR, ROR, EBGM, and IC (BCPNN), over FAERS /...

maziyarpanahi/openmed5.8k

Enforcing Nophi Logging

Add a logging and telemetry guard that scrubs or blocks PHI from logs, traces, and...

maziyarpanahi/openmed5.8k

Etl To Omop Cdm

Map OpenMed-extracted, terminology-coded conditions, drugs, and measurements into OMOP...

maziyarpanahi/openmed5.8k

Evaluating With Leakage Gates

Evaluate an OpenMed de-identification or clinical NER model against the leakage-first...

maziyarpanahi/openmed5.8k

Exporting Bulk Fhir

Kick off and harvest a FHIR Bulk Data $export (system-, group-, or patient-level) and...

maziyarpanahi/openmed5.8k

Exporting To Fhir

Convert OpenMed NER output (entities from openmed.analyze_text) into FHIR R4 resources...

maziyarpanahi/openmed5.8k

Extract Clinical Entities To Fhir

Extract clinical entities from synthetic or already de-identified text with OpenMed and...

maziyarpanahi/openmed5.8k

Extracting Clinical Entities

Run clinical and biomedical named-entity recognition on medical text with OpenMed's...

maziyarpanahi/openmed5.8k

Extracting Dicom Metadata

Reads DICOM file headers and DICOM-SR (Structured Report) content to pull study/series...

maziyarpanahi/openmed5.8k

Extracting Lab Tables

Detects and extracts tabular laboratory panels from PDFs, scans, and images into...

maziyarpanahi/openmed5.8k

Extracting Pii Entities

Detect PHI/PII spans in clinical text with OpenMed's extract_pii without altering the...

maziyarpanahi/openmed5.8k

Extracting Sdoh

Extracts social determinants of health (SDOH), housing instability, food insecurity...

maziyarpanahi/openmed5.8k

Fetching Fhir Resources

Fetches and pages FHIR R4 resources (Patient, DocumentReference, DiagnosticReport...

maziyarpanahi/openmed5.8k

Gating Deid Leakage

Add a CI gate that fails the build when an OpenMed de-identification model's recall on...

maziyarpanahi/openmed5.8k

Generating Synthea Data

Generates synthetic but realistic patient records (FHIR R4 bundles, C-CDA documents...

maziyarpanahi/openmed5.8k

Generating Synthetic Surrogates

Replace detected PHI with realistic, type-matched fake values in OpenMed so clinical...

maziyarpanahi/openmed5.8k

Ingesting Clinical Documents

Turn scanned faxes, images, and CSV/CDA exports into clean text ready for OpenMed...

maziyarpanahi/openmed5.8k

Linking Umls Concepts

Links entities extracted by OpenMed to UMLS Metathesaurus CUIs using the USER'S OWN UTS...

maziyarpanahi/openmed5.8k

Loading Openmed Models

Load OpenMed clinical/biomedical NER models from the Hugging Face Hub or a local path...

maziyarpanahi/openmed5.8k

Mapping Loinc

Maps laboratory and clinical observation names extracted by OpenMed to LOINC codes...

maziyarpanahi/openmed5.8k

Mapping To Snomed

Maps clinical concept spans extracted by OpenMed to SNOMED CT concepts through a...

maziyarpanahi/openmed5.8k