Building With Openmed
Orient and bootstrap any project that uses OpenMed, the on-device clinical and...
Install
npx skills add maziyarpanahi/openmed --skill building-with-openmed -g -a claude-code -y- Repository
- maziyarpanahi/openmed5.8k
- Category
- Engineering
- Updated
- 4d ago
- License
- Apache-2.0
- Context cost
- Lightabout 1,306 tokens
- Runs scripts
- No, instructions only
What it does
Orient and bootstrap any project that uses OpenMed, the on-device clinical and biomedical NLP library, for named-entity recognition, PHI de-identification, FHIR export, and evaluation. Use when the user mentions OpenMed, wants to install it, asks which OpenMed capability or model fits a task, or is starting to build a clinical/medical text pipeline and needs the right entry point.
Building with OpenMed
OpenMed is an Apache-2.0, local-first Python library for clinical and biomedical NLP. Models download once from the Hugging Face Hub and then run fully on-device, no network calls, no telemetry, no raw PHI in logs, caches, or temp files. This skill is the map: it tells you what OpenMed can do and which focused skill (or API) to reach for next.
When to use this skill
Use it to scope a task and pick an entry point. For the actual work, hand off to the focused OpenMed skills (each is grounded in the real API):
| Task | Skill / API |
|---|---|
| Find and load a model | loading-openmed-models, choosing-openmed-models |
| Run clinical/biomedical NER | extracting-clinical-entities (openmed.analyze_text) |
| Zero-shot NER (no fine-tune) | running-zeroshot-ner (openmed zero) |
| Remove / mask PHI | deidentifying-clinical-text (openmed.deidentify) |
| Detect PHI spans only | extracting-pii-entities (openmed.extract_pii) |
| Restore masked PHI | reidentifying-text (openmed.reidentify) |
| Pick a privacy policy | configuring-privacy-policies (7 bundled profiles) |
| Non-English PHI | deidentifying-multilingual-text |
| Signed, no-PHI audit | auditing-deidentification-runs (audit=True) |
| Negation / temporality | resolving-clinical-context (openmed.clinical) |
| Evaluate with leakage gates | evaluating-with-leakage-gates (openmed.eval) |
| FHIR R4 export | exporting-to-fhir (openmed.interop) |
| Serve REST / MCP | serving-openmed-rest-api, deploying-openmed-mcp |
| Run on Apple Silicon / edge | running-openmed-ondevice (MLX / CoreML / ONNX) |
