
Generating Synthetic Surrogates
Replace detected PHI with realistic, type-matched fake values in OpenMed so clinical...
Install
npx skills add maziyarpanahi/openmed --skill generating-synthetic-surrogates -g -a claude-code -y- Repository
- maziyarpanahi/openmed5.8k
- Category
- Writing
- Updated
- 4d ago
- License
- Apache-2.0
- Context cost
- Mediumabout 1,572 tokens
- Runs scripts
- No, instructions only
What it does
Replace detected PHI with realistic, type-matched fake values in OpenMed so clinical notes stay readable and parseable instead of full of [REDACTED] markers. Use when the user wants surrogate names, MRNs, addresses, or dates rather than opaque masks, needs consistent fake identities across a document, must keep notes natural for downstream NLP, or wants to register a custom surrogate generator or provider. Covers deidentify(method=\"replace\", consistent=True, seed=..., locale=...), register_label_generator, register_clinical_provider, and Anonymizer/AnonymizerConfig. Pairs with OpenMed deidentifying-clinical-text and configuring-privacy-policies.
Generating synthetic surrogates
method="replace" swaps each detected identifier for a realistic, type-matched
fake, John Doe becomes Mark Lee, a phone becomes a plausible phone, a date
becomes a plausible date. Unlike opaque [REDACTED]/[NAME] masks, surrogate
text reads naturally and stays parseable by downstream NLP, while still
containing no real PHI. OpenMed generates surrogates on-device via Faker-backed
providers keyed to each canonical label.
When to use this skill
Use surrogates when the de-identified text must remain readable or machine-
parseable: training data for clinical NLP, demos, QA, or notes a human still
needs to skim. If you only need the identifiers gone and don't care about
readability, plain method="mask" is simpler and more obviously redacted.
Quick start
import openmed
note = (
"Patient John Doe (MRN 1234567) saw Dr. John Doe's colleague on 2024-03-02. "
"Reach John Doe at 617-555-0142."
)
result = openmed.deidentify(
note,
method="replace",
consistent=True, # every "John Doe" -> the SAME surrogate within this call
seed=42, # reproducible across runs
locale="en_US", # shapes the fakes; defaults from lang via LANG_TO_LOCALE
)
print(result.deidentified_text)
# Patient Mark Lee (MRN 8830127) saw Dr. Mark Lee's colleague on 2024-07-18. ...
consistent=True is what makes the output coherent: the three mentions of
"John Doe" collapse to one fake identity instead of three different ones, so the
note still makes sense. seed= makes that mapping reproducible run to run.
